Publications

Matthew T. Klope, Juan A. Tapia Cardona, Jun Chen, Ryan L. Gonciarz, Ke Cheng, Priyadarshini Jaishankar, Julie Kim, Jenny Legac, Philip J. Rosenthal, Adam R. Renslo (2024). Synthesis and In Vivo Profiling of Desymmetrized Antimalarial Trioxolanes with Diverse Carbamate Side Chains. In ACS Med. Chem. Lett. 2024.

PDF Cite DOI American Chemical Society

Lingkuan Meng, Jiecong Lin, Ke Cheng, Kui Xu, Hongyan Sun, Ka-Chun Wong (2024). UniPTM: Multiple PTM site prediction on full-length protein sequence. In bioRxiv 2024.08.03.606471.

PDF Cite DOI bioRxiv Source Code

Aidan T. Pezacki, Ryan L. Gonciarz, Toshitaka Okamura, Carson D. Matier, Laura Torrente, Ke Cheng, Sophia G. Miller, Martina Ralle, Nathan P. Ward, Gina M. DeNicola, Adam R. Renslo, Christopher J. Chang (2024). A tandem activity-based sensing and labeling strategy reveals antioxidant response element regulation of labile iron pools. In PNAS 2024, 121(28), e2401579121.

PDF Cite DOI PNAS PubMed

Xiaojie Ren, Haokun Li, Hui Peng, Yang Yang, Hang Su, Chen Huang, Xuan Wang, Jie Zhang, Zhiyang Liu, Wenyu Wei, Ke Cheng, Tianyang Zhu, Zhenpin Lu, Zhengqiu Li, Qian Zhao, Ben Zhong Tang, Shao Q Yao, Xiangzhi Song, Hongyan Sun (2024). Reactivity-Tunable Fluorescent Platform for Selective and Biocompatible Modification of Cysteine or Lysine. In Adv. Sci. 2024, 11, 2402838.

PDF Cite DOI Wiley Press PubMed

Pingzhou Wu, Zheng Qu, Jie Zhang, Xiaojie Ren, Dongqing Wang, Chen Huang, Ke Cheng, Junyang Qi, Heng Shi, Shenglong Gan, Wenyu Wei, Yachao Zhang, Chun-Sing Lee, Lidai Wang, Hongyan Sun (2024). A General Cyanine-Based Platform for Designing Robust Dual-Channel Near-Infrared Fluorescent and Photoacoustic Probes. In Adv. Funct. Mater. 2024, 2400597.

PDF Cite DOI Wiley Online Library

Lingkuan Meng, Xingjian Chen, Ke Cheng, Nanjun Chen, Zetian Zheng, Fuzhou Wang, Hongyan Sun, Ka-Chun Wong (2024). TransPTM: a transformer-based model for non-histone acetylation site prediction. In Brief. Bioinform 2024, 25, bbae219.

PDF Cite DOI Oxford University Press PubMed Source Code

Yue Xiong, Chao He, Xun Lin, Ke Cheng, Fumei He, Jingxin Zhao, Mengjie Yang, Hong Gao, Fangjie He, Xiaopei Zhang, Zeqi Liu, Gan Liu, Wenbin Deng (2024). Black phosphorus nanosheets inhibit glioblastoma cell migration and invasion through modulation of WNT/β-catenin and NOTCH signaling pathways. In J. Chem. Eng. 2023, 472, 144977.

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Fumei He, Ke Cheng, Junyang Qi, Fangjie He, Chengjun Chu, Yue Xiong, Jingxin Zhao, JiaQi Ding, FanShu Kong, ZiMeng Cao, Gan Liu, Wenbin Deng (2023). Black phosphorus nanosheets enhance differentiation of neural progenitor cells for improved treatment in spinal cord injury. In J. Chem. Eng. 2023, 472, 144977.

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Zhuming Fan, Zhiyang Liu, Nan Zhang, Wenyu Wei, Ke Cheng, Hongyan Sun, Quan Hao (2023). Identification of SIRT3 as an eraser of H4K16la. In iScience 2023, 26, 107757.

PDF Cite DOI CellPress PubMed

Jie Zhang, Heng Shi, Chen Huang, Le Mei, Qiang Guo, Ke Cheng, Pingzhou Wu, Dan Su, Qingxin Chen, Shenglong Gan, Cecilia Ka Wing Chan, Jiahai Shi, Jian Lin Chen, Chung Hang Jonathan Choi, Shao Q. Yao, Xian-Kai Chen, Ben Zhong Tang, Jufang He, Hongyan Sun (2023). De novo designed self-assembling rhodamine probe for real-time, long-term and quantitative live-cell nanoscopy. In ACS Nano 2023, 17, 3632–3644.

PDF Cite DOI ACS Publications PubMed

Wenyu Wei, Jie Zhang, Zhiqiang Xu, Zhiyang Liu, Chen Huang, Ke Cheng, Lingkuan Meng, Yudai Matsuda, Quan Hao, Huatang Zhang, Hongyan Sun (2023). Universal strategy to develop fluorogenic probes for kysine deacylase/demethylase activity and application in discriminating demethylation states. In ACS Sens. 2023, 8, 28–39.

PDF Cite DOI ACS Publications

Ke Cheng, Junyang Qi, Jie Zhang, Huangxu Li, Xiaojie Ren, Wenyu Wei, Lingkuan Meng, Jing Li, Qianqian Li, Huatang Zhang, Wenbin Deng, Hongyan Sun, Lin Mei (2022). Self-assembled nano-photosensitizer for targeted, activatable, and biosafe cancer phototheranostics. In Biomaterials 2022, 291, 121916.

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Ke Cheng, Junyang Qi, Xiaojie Ren, Jie Zhang, Huangxu Li, Hanyue Xiao, Rui Wang, Zhiyang Liu, Lingkuan Meng, Nan Ma, Hongyan Sun (2022). Developing isoxazole as a native photo-cross-linker for photoaffinity labeling and chemoproteomics. In Angew. Chem. Int. Ed. 2022, 61, e202209947.

PDF Cite DOI Wiley Online Library PubMed

Lingkuan Meng, Wai-Sum Chan, Lei Huang, Linjing Liu, Xingjian Chen, Weitong Zhang, Fuzhou Wang, Ke Cheng, Hongyan Sun, Ka-Chun Wong (2022). Mini-review: Recent advances in post-translational modification site prediction based on deep learning. In Comput. Struct. Biotechnol. J. 2022, 20, 3522‑3532.

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Huangxu Li, Chaohong Guan, Jie Zhang, Ke Cheng, Qingxin Chen, Liang He, Xiaochen Ge, Yanqing Lai, Hongyan Sun, Zhian Zhang (2022). Robust artificial interphases constructed by a versatile protein-based binder for high-voltage Na-ion battery cathodes. In Adv. Mater. 2022, 34, 2202624.

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Huangxu Li, Chaohong Guan, Ming Xu, Jun Guo, Kuo Yuan, Ke Cheng, Yangyang Xie, Liuyun Zhang, Jingqiang Zheng, Yanqing Lai, Zhian Zhang (2022). Organic/inorganic anions coupling enabled reversible high-valent redox in vanadium-based polyanionic compound. In Energy Storage Mater. 2022, 47, 526‑533.

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H. Li, W. Zhang, Z. Han, K. Sun, C. Gao, Ke Cheng, Z. Liu, Q. Chen, J. Zhang, Y. Lai, Z. Zhang, H. Sun (2021). Pseudocapacitance enhanced by N-defects in Na3MnTi(PO4)3/N-doped carbon composite for symmetric full sodium-ion batteries. In Mater. Today Energy 2021, 21, 100754.

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Jie Zhang, Guohua Wen, Wanhe Wang, Ke Cheng, Qiang Guo, Shuang Tian, Chao Liu, Hanrong Hu, Yachao Zhang, Huatang Zhang, Lidai Wang, Hongyan Sun (2021). Controllable cleavage of C–N bond-based fluorescent and photoacoustic dual-modal probes for the detection of H2S in living mice. In ACS Appl. Bio Mater. 2021, 4, 2020–2025.

PDF Cite DOI ACS Publications PubMed

Junyang Qi, Yue Xiong, Ke Cheng, Qi Huang, Jingxiu Cao, Fumei He, Lin Mei, Gan Liu, Wenbin Deng (2021). Heterobifunctional PEG-grafted black phosphorus quantum dots: “Three-in-One” nano-platforms for mitochondria-targeted photothermal cancer therapy. In Asian J. Pharm. Sci. 2021, 16, 222‑235.

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Qingxin Chen, Ke Cheng, Wanhe Wang, Liu Yang, Yusheng Xie, Ling Feng, Jie Zhang, Huatang Zhang, Hongyan Sun (2020). A pyrene-based ratiometric fluorescent probe with a large Stokes shift for selective detection of hydrogen peroxide in living cells. In J. Pharm. Anal. 2020, 10, 490‑497.

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Guansheng Zheng, Zejun Li, Qinya Duan, Ke Cheng, Yong He, Shumei Huang, Huatang Zhang, Yin Jiang, Yongguang Jia, Hongyan Sun (2020). Two quenching groups are better than one: A robust strategy for constructing HOCl fluorescent probe with minimized background fluorescence and ultra-high sensitivity and its application of HOCl imaging in living cells and tissues. In Sens. Actuators B Chem. 2020, 310, 127890.

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Nan Ma, Zhi-Min Zhang, Jun-Seok Lee, Ke Cheng, Ligen Lin, Dong-Mei Zhang, Piliang Hao, Ke Ding, Wen-Cai Ye, Zhengqiu Li (2019). Affinity-based protein profiling reveals cellular targets of photoreactive anticancer inhibitors. In ACS Chem. Biol. 2019, 14, 2546–2552.

PDF Cite DOI ACS Publications PubMed

Qinya Duan, Guansheng Zheng, Zejun Li, Ke Cheng, Jie Zhang, Liu Yang, Yin Jiang, Huatang Zhang, Jun He, Hongyan Sun (2019). An ultra-sensitive ratiometric fluorescent probe for hypochlorous acid detection by the synergistic effect of AIE and TBET and its application of detecting exogenous/endogenous HOCl in living cells. In J. Mater. Chem. B 2019, 7, 5125-5131.

PDF Cite DOI RSC Publishing

Ke Cheng, Jun-Seok Lee, Piliang Hao, Shao Q. Yao, Ke Ding, Zhengqiu Li (2017). Tetrazole-based probes for integrated phenotypic screening and chemoproteomics. In Angew. Chem. Int. Ed. 2017, 56, 15044-15048.

PDF Cite DOI Wiley Online Library PubMed